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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46308356_46322452_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46308356 - 46322452
Intron Length:
14097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGAATTAAGC
Flanking Amino Acid:
MCISLLWEHQRLLEASSSKE
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
49
-0
2.1
68.45
42.8

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044650
46308279 - 46402539
94261