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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46322746_46338140_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46322746 - 46338140
Intron Length:
15395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
AGTACCTAACAG
Flanking Amino Acid:
REYRDACTITDVCNSTNLPE
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
86.6
0.82
0.9
88.2
29.1
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
43.6
-0.6
2
48.7
44.3

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000047177
46322453 - 46398602
76150
ENSAPLT00000045081
46301702 - 46402539
100838