About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4632685_4642123_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4632685 - 4642123
Intron Length:
9439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTGTAATTATTT
Flanking Amino Acid:
CLPVSLCSSSSSERRMADGD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
46.9
-0.1
2
65.77
45

Associated Gene:

Gene:
VILL
Ensembl Gene ID:
ENSAPLG00000008184
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042057
4632575 - 4663135
30561