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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46367724_46371742_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46367724 - 46371742
Intron Length:
4019

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACGTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
ACAAACTTACCC
Flanking Amino Acid:
IDAVTRLLEEKERDLELAAR
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
79.1
0.65
0.9
72.7
37.4
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
47.9
-0.1
1.8
55.53
42.2

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000038463
46358912 - 46402539
43628
ENSAPLT00000014567
46350583 - 46402539
51957
ENSAPLT00000047177
46322453 - 46398602
76150
ENSAPLT00000045081
46301702 - 46402539
100838