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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46378548_46378992_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46378548 - 46378992
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTTTCTTAAAG
Flanking Amino Acid:
QLVNDCVKELRDANIQIANI
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.8
39.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.8
0.56
1
75.1
33.1
Minor 5ss
44.7
-0.6
2.8
60.1
38.2
Minor BPS
71
0.52
1.5
72.05
40.8

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014567
46350583 - 46402539
51957
ENSAPLT00000047177
46322453 - 46398602
76150
ENSAPLT00000045081
46301702 - 46402539
100838
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000038463
46358912 - 46402539
43628