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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46380833_46382130_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46380833 - 46382130
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
RYHSLGLFPMDSLAAEIEGS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.7
0.76
0.9
81
35.4
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045081
46301702 - 46402539
100838
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000038463
46358912 - 46402539
43628
ENSAPLT00000014567
46350583 - 46402539
51957
ENSAPLT00000047177
46322453 - 46398602
76150