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Intron Name: Anas_platyrhynchos_platyrhynchos_2_46382208_46384219_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46382208 - 46384219

Intron Length:

2012

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTATGACTG

5'SS Class:

weak_major

3'SS Sequence:

TATCTCTTACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

TATCTCTTACCA

Flanking Amino Acid:

HLDEPDSPDLAHQKRVFETV

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.3

0.13

1.4

49.9

46.5

Major BPS

76.8

0.67

0.9

75.9

Major PPT

77.4

0.62

0.9

70.7

39.5

Minor 5ss

42.6

-0.8

3.1

52.1

44.9

Minor BPS

64.2

0.44

1.6

73.71

37.7

Associated Gene:

Gene:

TRAK1

Ensembl Gene ID:

ENSAPLG00000013951

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045081

46301702 - 46402539

100838

ENSAPLT00000044650

46308279 - 46402539

94261

ENSAPLT00000038463

46358912 - 46402539

43628

ENSAPLT00000014567

46350583 - 46402539

51957

ENSAPLT00000047177

46322453 - 46398602

76150