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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46384457_46385456_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46384457 - 46385456
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTCCTGTTATG
Flanking Amino Acid:
IILETESSENGNEDRMKKPG
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
75.3
40.8
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
76.2
0.59
0.9
73.8
41.4
Minor 5ss
33.3
-1.9
2.6
36.6
39.8
Minor BPS
46.2
-0.4
2.3
60.32
42

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045081
46301702 - 46402539
100838
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000038463
46358912 - 46402539
43628
ENSAPLT00000014567
46350583 - 46402539
51957
ENSAPLT00000047177
46322453 - 46398602
76150