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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46385774_46389687_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46385774 - 46389687
Intron Length:
3914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAACA
5'SS Class:
major
3'SS Sequence:
GTTCCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ACTGATTTATTT
Flanking Amino Acid:
EKLQIVKPLEGSATLHHWQQ
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
31.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.4
0.53
1
71.3
38.6
Minor 5ss
28.4
-2.5
2.7
32.9
41.5
Minor BPS
47.1
-0.1
1.8
62.41
42.6

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045081
46301702 - 46402539
100838
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000038463
46358912 - 46402539
43628
ENSAPLT00000014567
46350583 - 46402539
51957
ENSAPLT00000047177
46322453 - 46398602
76150