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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46390018_46397092_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46390018 - 46397092
Intron Length:
7075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGAA
5'SS Class:
major
3'SS Sequence:
TTTTTAAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
ESATDDDEGSVPHPGKCMSQ
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
67.1
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
76.3
37
Minor 5ss
23.2
-3.1
3.2
24.9
38.7
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047177
46322453 - 46398602
76150
ENSAPLT00000044650
46308279 - 46402539
94261
ENSAPLT00000038463
46358912 - 46402539
43628