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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46397196_46398513_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46397196 - 46398513
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CGATTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
AACTCCTTACCA
Flanking Amino Acid:
PSDELTRVTPRSCEKDEETA
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
74.5
0.55
0.9
68.1
37.3
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
66.2
0.5
1.6
70.9
41.2

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047177
46322453 - 46398602
76150