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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46478562_46479414_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46478562 - 46479414
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATT
Flanking Amino Acid:
VTGIECVKGVVSFFVVSLGG
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
35.7
-1.6
2.6
42.3
44.5
Minor BPS
69.2
0.68
1.6
87.82
31.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029876
46448569 - 46497459
48891
ENSAPLT00000014829
46448569 - 46496885
48317