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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46489421_46489902_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46489421 - 46489902
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGATAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTAAATAAAT
Flanking Amino Acid:
QQYLYKPRQEHKHLYSRHEI
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71
0.47
1
66
38.5
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
47.4
-0.1
2.1
72.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029876
46448569 - 46497459
48891
ENSAPLT00000014829
46448569 - 46496885
48317