Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46490080_46490659_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46490080 - 46490659

Intron Length:

580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAAATAA

5'SS Class:

major

3'SS Sequence:

TGTTTTCTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TTTTTCTTGATT

Flanking Amino Acid:

IHKRDRGQKRRNSNVIPNGK

Intron Amino Acid Position:

685

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

67.2

34.4

Major BPS

83.8

0.84

73.6

41.8

Major PPT

86.6

0.82

0.7

85.5

29.2

Minor 5ss

36.2

-1.6

3.1

38.4

46.7

Minor BPS

83.2

1.13

0.9

94.4

25.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014235

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014829

46448569 - 46496885

48317

ENSAPLT00000029876

46448569 - 46497459

48891