About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46492261_46496881_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46492261 - 46496881
Intron Length:
4621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TTGTATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGTATTTAATT
Flanking Amino Acid:
TKQNFTENSTGDMDHDVEMT
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.7
0.67
0.8
78.2
36
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
66.1
0.58
1.5
77.43
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029876
46448569 - 46497459
48891