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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4649359_4649446_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4649359 - 4649446
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTCTGCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTAACT
Flanking Amino Acid:
ELQKANVRLYHVYEKDNDLV
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
80.4
0.68
0.8
76.7
32
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
74.8
0.86
1.6
86.69
38.7

Associated Gene:

Gene:
VILL
Ensembl Gene ID:
ENSAPLG00000008184
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042057
4632575 - 4663135
30561
ENSAPLT00000008524
4640016 - 4663135
23120