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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46494287_46496881_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46494287 - 46496881
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAATATCT
5'SS Class:
major
3'SS Sequence:
TTGTATTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGTATTTAATT
Flanking Amino Acid:
PRSFLPESTHM*
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
70
34.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.7
0.67
0.8
78.2
36
Minor 5ss
43.1
-0.8
3.1
62.6
41.7
Minor BPS
66.1
0.58
1.5
77.43
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014829
46448569 - 46496885
48317