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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46513095_46517502_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46513095 - 46517502
Intron Length:
4408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATT
Flanking Amino Acid:
ILTGRIQKLLSPLKTPLKML
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.4
0.75
0.8
77.7
36.2
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
79.8
1.01
1
88.33
30.2

Associated Gene:

Gene:
LRRC14B
Ensembl Gene ID:
ENSAPLG00000014369
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014966
46512190 - 46518148
5959