Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4652828_4653838_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4652828 - 4653838

Intron Length:

1011

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

CTGGTGCGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

CTTGCCTTTATT

Flanking Amino Acid:

LGKIYTVGKTAKVEQVKFDT

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.8

79.6

35.4

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

64.6

0.33

1.1

57.6

43.2

Minor 5ss

-1.8

2.8

39.3

40.3

Minor BPS

63.8

0.52

1.8

79.54

Associated Gene:

Gene:

VILL

Ensembl Gene ID:

ENSAPLG00000008184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042057

4632575 - 4663135

30561

ENSAPLT00000008524

4640016 - 4663135

23120