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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46538683_46538834_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46538683 - 46538834
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ACACCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
TTTTTTGGCACA
Flanking Amino Acid:
MLSWHAWWTWDLL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
50
0
1.5
63.1
44.5
Major PPT
64.9
0.34
1
54.4
40.6
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
44.5
-0.4
2.4
67
40.1

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306
ENSAPLT00000046444
46538578 - 46645977
107400