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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46538918_46571543_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46538918 - 46571543
Intron Length:
32626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCATACTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCATACTT
Flanking Amino Acid:
HSGSAAEIIEERGSKGSLDL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.1
0.57
0.9
69.1
36.5
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
48.7
-0
1.9
69.5
41.9

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046444
46538578 - 46645977
107400
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306