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Intron Name: Anas_platyrhynchos_platyrhynchos_2_4656679_4657234_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4656679 - 4657234

Intron Length:

556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGACCA

5'SS Class:

strong_major

3'SS Sequence:

GTCCTGAACCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

CTGTCCTGAACC

Flanking Amino Acid:

NQVCYLWCGKGCSGDEREMA

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

70.4

35.4

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

56.2

0.14

47.5

39.5

Minor 5ss

26.8

-2.7

2.8

31.2

42.4

Minor BPS

71.3

0.65

1.5

75.23

41.3

Associated Gene:

Gene:

VILL

Ensembl Gene ID:

ENSAPLG00000008184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042057

4632575 - 4663135

30561

ENSAPLT00000008524

4640016 - 4663135

23120