Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4657381_4658050_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4657381 - 4658050

Intron Length:

670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATAGTG

5'SS Class:

strong_major

3'SS Sequence:

ATGCATGAGGAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTCATCTCAATT

Flanking Amino Acid:

GGKAPYASEKRFQEQITHYQ

Intron Amino Acid Position:

606

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

71.8

38.2

Major BPS

100

1.24

0.5

100

Major PPT

46.4

-0.2

1.2

41.9

41.7

Minor 5ss

34.1

-1.8

3.5

47.2

48.2

Minor BPS

61.1

0.43

1.6

76.38

40.7

Associated Gene:

Gene:

VILL

Ensembl Gene ID:

ENSAPLG00000008184

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042057

4632575 - 4663135

30561

ENSAPLT00000008524

4640016 - 4663135

23120