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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46574473_46576624_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46574473 - 46576624
Intron Length:
2152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
TTATGTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTAAACA
Flanking Amino Acid:
ALSPSHLPIRLEDTLAEPVE
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.4
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.9
0.61
0.9
74.9
39.6
Minor 5ss
42.7
-0.8
2.9
49.3
47
Minor BPS
76.3
0.82
1.6
86.69
32.1

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306
ENSAPLT00000046444
46538578 - 46645977
107400