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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46584329_46584520_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46584329 - 46584520
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGACCTTTTATT
Flanking Amino Acid:
RGLPGSIGPKGSTGDTGLIG
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.7
81.4
29
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
55.9
0.27
1.6
70.89
39.8

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306
ENSAPLT00000046444
46538578 - 46645977
107400