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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46600351_46600441_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46600351 - 46600441
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGCTTTTAAAA
Flanking Amino Acid:
KGEKGDPGPQGERGQDGNSI
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
77.6
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.4
0.3
1
59.9
39.6
Minor 5ss
36.1
-1.6
3.2
46.6
48.7
Minor BPS
58.1
0.25
1.4
63.93
36.1

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306
ENSAPLT00000046444
46538578 - 46645977
107400