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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46612604_46612720_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46612604 - 46612720
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCCTCAACA
Flanking Amino Acid:
TELLGRKGQKGEAGVVGPVG
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.1
0.48
0.9
66.2
34.3
Minor 5ss
35.1
-1.7
2.7
41.3
45.2
Minor BPS
71.8
0.68
1.5
76.78
40.1

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306
ENSAPLT00000046444
46538578 - 46645977
107400
ENSAPLT00000022872
46538672 - 46645977
107306