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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46612757_46616523_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46612757 - 46616523
Intron Length:
3767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCCACAATC
Flanking Amino Acid:
AGVVGPVGPRGPIGPAGPKG
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.6
0.76
0.9
76.7
37.4
Minor 5ss
34.2
-1.8
3.2
41.7
44.2
Minor BPS
57.7
0.22
1.8
71.62
39.8

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046444
46538578 - 46645977
107400
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306