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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46644377_46645302_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46644377 - 46645302
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
GAAATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGCTTTTGAAAT
Flanking Amino Acid:
RYNLPIVNLKGEMLFHNWES
Intron Amino Acid Position:
1042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
64.6
0.33
1.1
58.5
45.7
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
55
0.24
1.5
70.27
40.6

Associated Gene:

Gene:
COL15A1
Ensembl Gene ID:
ENSAPLG00000014374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046444
46538578 - 46645977
107400
ENSAPLT00000022872
46538672 - 46645977
107306
ENSAPLT00000021646
46538672 - 46645977
107306
ENSAPLT00000014995
46538672 - 46645977
107306