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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46662411_46662804_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46662411 - 46662804
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCT
Flanking Amino Acid:
NKIELPIPTPGPTPGKPASN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.7
0.87
0.7
86.5
26.6
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
TGFBR1
Ensembl Gene ID:
ENSAPLG00000009967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010387
46656438 - 46684803
28366