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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46663048_46668218_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46663048 - 46668218
Intron Length:
5171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTCA
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTAATATTAAAT
Flanking Amino Acid:
YDMTTSGSGSGLPLLVQRTI
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.3
38
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
87.1
0.83
0.7
84.9
29.2
Minor 5ss
42.6
-0.8
3.1
56.9
47.3
Minor BPS
57
0.3
1.7
76.28
39.4

Associated Gene:

Gene:
TGFBR1
Ensembl Gene ID:
ENSAPLG00000009967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010387
46656438 - 46684803
28366