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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46682387_46684677_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46682387 - 46684677
Intron Length:
2291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGGCT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ATGTAATTACTT
Flanking Amino Acid:
NIPNRWQSCEALRVMAKIMR
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
38.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
38
-1.4
3.6
56.7
47.6
Minor BPS
47.8
-0
2
68.45
42.5

Associated Gene:

Gene:
TGFBR1
Ensembl Gene ID:
ENSAPLG00000009967
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010387
46656438 - 46684803
28366