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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46706745_46709566_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46706745 - 46709566
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTCCCTACTT
Flanking Amino Acid:
AAPLLAPGAAGLSCCYHAKD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.8
0.6
0.8
72.7
31.8
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
52.3
0.15
2
71.93
45.5

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001449
46706501 - 46761477
54977
ENSAPLT00000032521
46706501 - 46761477
54977