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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46709626_46715491_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46709626 - 46715491
Intron Length:
5866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTGTTTCTAACA
Flanking Amino Acid:
NLMCRDVCEQILSSKSDSRL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
63.9
0.43
1.6
75.22
36.5

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001449
46706501 - 46761477
54977
ENSAPLT00000032521
46706501 - 46761477
54977