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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46715567_46718469_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46715567 - 46718469
Intron Length:
2903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
RAPEYCPESMGEVWGCINSS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
87.5
0.84
0.7
84.9
29.4
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001449
46706501 - 46761477
54977
ENSAPLT00000032521
46706501 - 46761477
54977