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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46718507_46724629_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46718507 - 46724629
Intron Length:
6123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAG
Flanking Amino Acid:
VWGCINSSLPGVLKKSDGWV
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
1
82.3
33.1
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
66.8
0.39
1.4
68.96
38.4

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032521
46706501 - 46761477
54977
ENSAPLT00000001449
46706501 - 46761477
54977