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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46729332_46730351_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46729332 - 46730351
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGCATTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TTTTTCTGGATT
Flanking Amino Acid:
VLKVCRKEYEEVGQYVLKEN
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
67.9
0.4
1
61.9
39.8
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
70.2
0.72
1.4
87.21
31.9

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032521
46706501 - 46761477
54977