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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46729332_46737632_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46729332 - 46737632
Intron Length:
8301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATT
Flanking Amino Acid:
VLKVCRKEYENALFSCINRN
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.4
0.71
0.9
78.1
40.1
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
66.4
0.6
1.3
81.5
34.7

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001449
46706501 - 46761477
54977