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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46741316_46741861_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46741316 - 46741861
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACAT
Flanking Amino Acid:
CCSKANSSTCRELCTKLYST
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.1
0.83
0.8
85.3
34.4
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
70.1
0.71
1.7
88.72
36.1

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001449
46706501 - 46761477
54977
ENSAPLT00000032521
46706501 - 46761477
54977