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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46743244_46744000_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46743244 - 46744000
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATCT
Flanking Amino Acid:
HSKSRGSIICKSDCVEILKK
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.5
0.51
1.1
73.1
36.3
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
62.5
0.47
1.8
81.72
39.6

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032521
46706501 - 46761477
54977
ENSAPLT00000001449
46706501 - 46761477
54977