About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46744138_46745758_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46744138 - 46745758
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATTCCGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATCATTATAT
Flanking Amino Acid:
ENCIPLDTYLSPSSLGNVVE
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.8
0.69
0.9
77.2
36.4
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
49
0
1.9
67.75
41.9

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032521
46706501 - 46761477
54977
ENSAPLT00000001449
46706501 - 46761477
54977