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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46751572_46753696_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46751572 - 46753696
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTATGTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGATCTTTAAAA
Flanking Amino Acid:
KTLAYRGPCQPFCKSVEPVC
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
77.4
0.62
0.9
73.9
40.2
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
71
0.65
1.3
74.57
36.3

Associated Gene:

Gene:
RECK
Ensembl Gene ID:
ENSAPLG00000001299
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032521
46706501 - 46761477
54977
ENSAPLT00000001449
46706501 - 46761477
54977