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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46778107_46779182_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46778107 - 46779182
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.6
29.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
39.8
-1.1
3
55.2
42.1
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
ADNP2
Ensembl Gene ID:
ENSAPLG00000000865
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000865
46769725 - 46779334
9610