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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46802693_46804444_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46802693 - 46804444
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTCCTTTTCACA
Flanking Amino Acid:
EEKVLSQNDSSESFSSATQS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
86.7
0.83
0.7
82.7
25.9
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
54.8
0.14
1.7
67.58
39.4

Associated Gene:

Gene:
RBFA
Ensembl Gene ID:
ENSAPLG00000015494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016146
46801952 - 46813433
11482