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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46807849_46809054_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
46807849 - 46809054
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGCTG
5'SS Class:
weak_major
3'SS Sequence:
TGTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTGATGAATG
Flanking Amino Acid:
SLLQKSAPRIRYLLMSQQIL
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.2
48.6
47.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.9
0.81
0.8
80.7
36.7
Minor 5ss
33.8
-1.8
3.6
47.6
47.8
Minor BPS
47.1
-0.3
2.1
58.85
42.7

Associated Gene:

Gene:
RBFA
Ensembl Gene ID:
ENSAPLG00000015494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016146
46801952 - 46813433
11482