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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46809168_46811326_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46809168 - 46811326
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTTACA
Flanking Amino Acid:
LYDLKLEICKVSLASNFSAC
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
82.6
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.7
0.87
0.7
83.5
31.6
Minor 5ss
21.7
-3.3
3.8
30.8
43.1
Minor BPS
57.6
0.23
1.6
68.96
36.8

Associated Gene:

Gene:
RBFA
Ensembl Gene ID:
ENSAPLG00000015494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016146
46801952 - 46813433
11482