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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46811504_46812690_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46811504 - 46812690
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GTTTGTTTGATT
Flanking Amino Acid:
YDSPALGSKMMYEPTKLTSV
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
69.8
0.45
1.1
72.7
41.4
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
61.4
0.44
1.8
79.17
37.6

Associated Gene:

Gene:
RBFA
Ensembl Gene ID:
ENSAPLG00000015494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016146
46801952 - 46813433
11482