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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46814599_46814922_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46814599 - 46814922
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTGATTGAATA
Flanking Amino Acid:
LDVTYPEPLPRDHPLLKMEN
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
79
0.72
1
69
38.9
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
48.9
-0
1.7
60.52
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016083
46814308 - 46818340
4033