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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46815020_46815591_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
46815020 - 46815591
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TACTGTAACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTACTGTAACC
Flanking Amino Acid:
PTATLINISRGLVVDQDDLV
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
70
37.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
59.9
0.22
1
51.9
41.5
Minor 5ss
35.6
-1.6
3.5
48.7
47.8
Minor BPS
56
0.17
2.1
70.49
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016083
46814308 - 46818340
4033