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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46815771_46816843_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46815771 - 46816843
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGACTTTAATTT
Flanking Amino Acid:
MKILYHNRKQRNKEEENAVG
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74
0.54
0.8
64.8
30.7
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
42.3
-0.5
1.7
52.54
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015438
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016083
46814308 - 46818340
4033